sci-biology/samtools: drop 1.10-r1
Signed-off-by: David Seifert <soap@gentoo.org>
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DIST samtools-0.1.20.tar.gz 566387 BLAKE2B a62d74c408877754af50f5e5fea0e2289ec1e0c9f25013ed0d039bfe8ef61108600d917f8c9d356e98aca632795b4eb0f01ea1b54526a652577fb74a38a433c2 SHA512 15bd8cf401d14c1ab4faa591b6054f5ea9731c4e966f37f71d33d9081a270cfeb91e8a3d80c631e0725b49da81387f824c206e8c21553ad554d0cfc5c238a6e5
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DIST samtools-1.10.tar.bz2 4721173 BLAKE2B 103c71ec5740eac151a4fc40d67286ee00123c7befd5f654cf5c89812bda44f82b38ab662a4a3216ac84434cabab49500b903612137f97f89a7ea38063e8fc08 SHA512 828ec2638592b440e06b81eafc57634416ab54dac6caaecb06f22a90e9bf99da1fd8bb54509cb98591899c4e097ac9038ee5d57ea7bfe1a18967cde4018d840a
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DIST samtools-1.13.tar.bz2 7984998 BLAKE2B e46161c43d4ea51c3ef1d9ed74c40c21b70aef80aa903a49b94b3d468f9211e9147281204eb61b9843c071f09ead08c924e3d624d4df76a1d02ba9ceb318399a SHA512 647fbad2935dfc3e4f85da257a6ee59af40078024a3b77f117dada5f55846e381a096db3cf62a63c04ae95dfc9fadb1d515b8d618e6388bc93f0b2ac85eaf6ea
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# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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inherit autotools toolchain-funcs
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DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
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HOMEPAGE="http://www.htslib.org/"
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SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
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RDEPEND="
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dev-lang/perl
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=sci-libs/htslib-${PV}*
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sys-libs/ncurses:=[unicode(+)]
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sys-libs/zlib:="
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DEPEND="${RDEPEND}"
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BDEPEND="virtual/pkgconfig"
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src_prepare() {
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default
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# remove bundled htslib
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rm -r htslib-* || die
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eautoreconf
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}
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src_configure() {
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econf \
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--with-ncurses \
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--with-htslib=system \
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CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw)"
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}
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src_compile() {
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emake AR="$(tc-getAR)"
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}
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src_test() {
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# the tview test diffs expect 80-columns output
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unset COLUMNS
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default
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}
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src_install() {
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default
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dodoc -r examples
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docompress -x /usr/share/doc/${PF}/examples
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}
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